@mikecox

I have found that sometimes the boxes in Fast Dial just disappear; for no apparent reason.

Thanks for your really helpful description and excellent picture.

This is your picture for easy reference
(please click to enlarge)

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Do you think the following could be linked to your situation ?

Comes from a thread here

I have found that this is a bug and it occurs for those thumbnails that were drag-n-dropped in Sort: Auto mode. They disappear when Sort mode is switched to None. I will fix this error in the next Fast Dial update. In fact bookmarks don't disappear, they just aren't shown in Sort: None mode due to an error. You can still access them in other sort modes or though browsers Bookmark Manager.

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If that is of no help we must look elsewhere.

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Are you getting any errors ?

Please see:
Using the Error Console

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Many thanks